J/ψJ/\psi production in Au+Au/Cu+Cu collisions at sNN\sqrt{s}_{NN}=200 GeV and the threshold model

Using the QGP motivated threshold model, where all the $J/\psi$'s are suppressed above a threshold density, we have analyzed the preliminary PHENIX data on the centrality dependence of nuclear modification factor for $J/\psi$'s in Cu+Cu and in Au+Au collisions, at RHIC energy, $\sqrt{s}_{NN}$=200 GeV. Centrality dependence of $J/\psi$ suppression in Au+Au collisions are well explained in the model for threshold densities in ranges of 3.6-3.7 $fm^{-2}$. $J/\psi$ suppression in Cu+Cu collisions on the other hand are not explained in the model.Comment: 6 pages, 5 figure

Conical flow due to partonic jets in central Au+Au collisions

In jet quenching, a hard QCD parton, before fragmenting into a jet of hadrons, deposits a fraction of its energy in the medium, leading to suppressed production of high-$p_T$ hadrons. The process can generate shock waves. We study the distortion of Mach shock waves due to jet quenching in central Au+Au collisions and its effect on particle production. Finite fluid velocity and inhomogeneity of the medium can distort the Mach shock front significantly such that the inside shock front disappear and the outside shock front is opened up. We also show that the STAR data on azimuthal distribution of background subtracted secondaries, associated with high $p_T$ trigger, are reasonably well explained by the excess pions produced due to partonic energy loss.Comment: 4 pages, 4 figure

Dust interferometers in plasmas

An interferometric imaging technique has been proposed to instantly measure the diameter of individual spherical dust particles suspended in a gas discharge plasma. The technique is based on the defocused image analysis of both spherical particles and their binary agglomerates. Above a critical diameter, the defocused images of spherical particles contain stationary interference fringe patterns and the fringe number increases with particle diameters. Below this critical diameter, the particle size has been measured using the rotational interference fringe patterns which appear only on the defocused images of binary agglomerates. In this case, a lower cut-off limit of particle diameter has been predicted, below which no such rotational fringe patterns are observed for the binary agglomerates. The method can be useful as a diagnostics for complex plasma experiments on earth as well as under microgravity condition

Effects of jet quenching on the hydrodynamical evolution of quark-gluon plasma

We study the effects of jet quenching on the hydrodynamical evolution of the quark-gluon plasma (QGP) fluid created in a heavy-ion collision. In jet quenching, a hard QCD parton, before fragmenting into a jet of hadrons, deposits a fraction of its energy in the medium, leading to suppressed production of high-pT hadrons. Assuming that the deposited energy quickly thermalizes, we simulate the subsequent hydrodynamic evolution of the QGP fluid. For partons moving at supersonic speed, v_p > c_s, and sufficiently large energy loss, a shock wave forms leading to conical flow [1]. The PHENIX Collaboration recently suggested that observed structures in the azimuthal angle distribution [2] might be caused by conical flow. We show here that conical flow produces different angular structures than predicted in [1] and that, for phenomenologically acceptable values of parton energy loss, conical flow effects are too weak to explain the structures seen by PHENIX [2].Comment: 4 pages, 3 figures. Last figure changed, now showing angular distribution of pions instead of photons. Added comments on "lost jets" and pT-dependence of angular correlation

Confinement and crowding control the morphology and dynamics of a model bacterial chromosome

Motivated by recent experiments probing shape, size and dynamics of bacterial chromosomes in growing cells, we consider a polymer model consisting of a circular backbone to which side-loops are attached, confined to a cylindrical cell. Such a model chromosome spontaneously adopts a helical shape, which is further compacted by molecular crowders to occupy a nucleoid-like subvolume of the cell. With increasing cell length, the longitudinal size of the chromosome increases in a non-linear fashion to finally saturate, its morphology gradually opening up while displaying a changing number of helical turns. For shorter cells, the chromosome extension varies non-monotonically with cell size, which we show is associated with a radial to longitudinal spatial reordering of the crowders. Confinement and crowders constrain chain dynamics leading to anomalous diffusion. While the scaling exponent for the mean squared displacement of center of mass grows and saturates with cell length, that of individual loci displays broad distribution with a sharp maximum.Comment: 12 pages, 12 figure

Quasi-two-dimensional complex plasma containing spherical particles and their binary agglomerates

A new type of quasi-two-dimensional complex plasma system was observed which consisted of monodisperse microspheres and their binary agglomerations (dimers). The particles and their dimers levitated in a plasma sheath at slightly different heights and formed two distinct sublayers. The sys- tem did not crystallize and may be characterized as disordered solid. The dimers were identified based on their characteristic appearance in defocused images, i.e., rotating interference fringe pat- terns. The in-plane and inter-plane particle separations exhibit nonmonotonic dependence on the discharge pressure which agrees well with theoretical predictions

Stochastic thermodynamics of macrospins with fluctuating amplitude and direction

We consider stochastic energy balance and entropy production (EP) in a generalized Langevin dynamics of macrospins, allowing for both amplitude and direction fluctuations, under external magnetic field. EP is calculated using Fokker-Planck equation, distinguishing between reversible and irreversible parts of probability currents. The system entropy increases due to irreversible non-equilibrium processes, and reduces as heat dissipates to surrounding environment. Using path probability distributions of time-forward trajectories and conjugate trajectories under time reversal, we obtain fluctuation theorems (FT) for total stochastic EP. We show that the choice of conjugate trajectories is crucial in obtaining entropy like quantities that obey FTs.Comment: 7 pages, no figure; version accepted for publication in Phys. Rev.

Transverse energy distributions and J/ψJ/\psi production in Pb+Pb collisions

We have analyzed the latest NA50 data on transverse energy distributions and $J/\psi$ suppression in Pb+Pb collisions. The transverse energy distribution was analysed in the geometric model of AA collisions. In the geometric model, fluctuations in the number of NN collisions at fixed impact parameter are taken into account. Analysis suggests that in Pb+Pb collisions, individual NN collisions produces less $$, than in other AA collisions. The nucleons are more transparent in Pb+Pb collisions. The transverse energy dependence of the $J/\psi$ suppression was obtained following the model of Blaizot et al, where charmonium suppression is assumed to be 100% effective above a threshold density. With fluctuations in number of NN collisions taken into account, good fit to the data is obtained, with a single parameter, the threshold density.Comment: Revised version with better E_T fit. 4 pages, 2 figure